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taking a sparse slice of an array - Mailing list pgsql-novice
From
Michael Lush
Subject
taking a sparse slice of an array
Date
December 9, 2011
04:15:33
Msg-id
CACXX7Mcqa9ONiYi=Msjn81FmrqTro52j1KqA6cqHkdVPCKq3yw@mail.gmail.com
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Re: taking a sparse slice of an array
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pgsql-novice
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Thank you for the useful responses to 'Big Wide Datasets'
I decided to have a go with the array option and initially it looked very promising
time psql test -c "SELECT sample_id, snp_data[40000] FROM gwas_test" > /dev/null
returned in 5 minutes from a 100000 row table.
The trouble is that it does not scale
time psql test -c "SELECT sample_id, snp_data[40000], snp_data[50000] FROM gwas_test" > /dev/null
takes 10 minutes :-(
Is there anyway to speed this up I can see snp_data[40000:50000] returns values from 40 to 50 thousand,
is there any way to so something like
snp_data[1,55,1000,40000,50000]
which would just return a 5 element array?
--
Michael
pgsql-novice
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